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Cofactor-free ActVA-Orf6 monooxygenase catalysis via proton-coupled electron transfer: a QM/MM study

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机构: [1]Key Laboratory for Special Functional Materials of Ministry of Education, School of Materials and Engineering, Henan University, Kaifeng 475001, China [2]Department of Traditional Chinese Medicine, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong 510280, China [3]College of Chemistry, Institute of Green Catalysis, Zhengzhou University, 100 Science Avenue, Zhengzhou, Henan 450001, China.
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Uncovering the comprehensive catalytic mechanism for the activation of triplet O-2 through metal-free and cofactor-free oxidases and oxygenases remains one of the most challenging problems in the area of enzymatic catalysis. Herein, we performed multiscale simulation with molecular dynamics (MD) and quantum mechanics/molecular mechanics (QM/MM) techniques to reveal the detailed mechanism of ActVA-Orf6 monooxygenase catalyzed oxygenation of phenols to quinones from Streptomyces coelicolor, such as the oxidation of 6-deoxydihydrocarafungin (DDHK) to dihydrocarafungin (DHK). The entire catalytic mechanism consists of three steps: (1) proton-coupled electron transfer (PCET) from the substrate DDHK to triplet O-2 with the aid of an explicit water molecule, (2) the formation of a C-O bond via an open-shell singlet diradical complexation pathway, and (3) dehydration via a six-membered ring mode assisted by one water molecule. The complete energetic profiles show that the rate-determining step is the dehydration with an energy barrier of 20.7 kcal mol(-1), which is close to that of 19.7 kcal mol(-1) derived from experimental kinetic data. Our mechanistic study not only helps to deeply understand the fundamental mechanism of metal-free and cofactor-free oxidase and oxygenase catalyzed different reactions, but also discloses a new route that proceeds through the processes of PCET and the open-shell singlet transition state.

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出版当年[2021]版:
大类 | 3 区 化学
小类 | 2 区 有机化学
最新[2025]版:
大类 | 3 区 化学
小类 | 3 区 有机化学
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出版当年[2020]版:
Q1 CHEMISTRY, ORGANIC
最新[2023]版:
Q1 CHEMISTRY, ORGANIC

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第一作者机构: [1]Key Laboratory for Special Functional Materials of Ministry of Education, School of Materials and Engineering, Henan University, Kaifeng 475001, China
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