高级检索
当前位置: 首页 > 详情页

The construction and analysis of tricarboxylic acid cycle related prognostic model for cervical cancer

文献详情

资源类型:
Pubmed体系:
机构: [1]Guangzhou Medical University, Guangzhou, China. [2]Department of Gynecology, Guangdong Women and Children Medical Hospital, Guangzhou, China. [3]Department of Surgical Neonatal Intensive Care Unit, Guangzhou Women and Children's Medical Center, Guangzhou, China. [4]Nanfang Hospital, Southern Medical University, Guangzhou, China. [5]Guangzhou University of Chinese Medicine, Guangzhou, China.
出处:
ISSN:

关键词: cervical cancer tricarboxylic acid cycle (TCA cycle) metabolic reprogramming prognostic signature bioinformatics

摘要:
Introduction: Cervical cancer (CC) is the fourth most common malignant tumor in term of in incidence and mortality among women worldwide. The tricarboxylic acid (TCA) cycle is an important hub of energy metabolism, networking one-carbon metabolism, fatty acyl metabolism and glycolysis. It can be seen that the reprogramming of cell metabolism including TCA cycle plays an indispensable role in tumorigenesis and development. We aimed to identify genes related to the TCA cycle as prognostic markers in CC. Methods: Firstly, we performed the differential expressed analysis the gene expression profiles associated with TCA cycle obtained from The Cancer Genome Atlas (TCGA) database. Differential gene list was generated and cluster analysis was performed using genes with detected fold changes >1.5. Based on the subclusters of CC, we analysed the relationship between different clusters and clinical information. Next, Cox univariate and multivariate regression analysis were used to screen genes with prognostic characteristics, and risk scores were calculated according to the genes with prognostic characteristics. Additionally, we analyzed the correlation between the predictive signature and the treatment response of CC patients. Finally, we detected the expression of ench prognostic gene in clinical CC samples by quantitative polymerase chain reaction (RT-qPCR). Results: We constructed a prognostic model consist of seven TCA cycle associated gene (ACSL1, ALDOA, FOXK2, GPI, MDH1B, MDH2, and MTHFD1). Patients with CC were separated into two groups according to median risk score, and high-risk group had a worse prognosis compared to the low-risk group. High risk group had lower level of sensitivity to the conventional chemotherapy drugs including cisplatin, paclitaxel, sunitinib and docetaxel. The expression of ench prognostic signature in clinical CC samples was verified by qRT-PCR. Conclusion: There are several differentially expressed genes (DEGs) related to TCA cycle in CC. The risk score model based on these genes can effectively predict the prognosis of patients and provide tumor markers for predicting the prognosis of CC.Copyright © 2023 Chen, Hong, He, Ou, Chen, Zhong, Lin and Luo.

基金:
语种:
PubmedID:
中科院(CAS)分区:
出版当年[2022]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
最新[2025]版:
大类 | 3 区 生物学
小类 | 3 区 遗传学
第一作者:
第一作者机构: [1]Guangzhou Medical University, Guangzhou, China. [2]Department of Gynecology, Guangdong Women and Children Medical Hospital, Guangzhou, China.
共同第一作者:
通讯作者:
通讯机构: [1]Guangzhou Medical University, Guangzhou, China. [2]Department of Gynecology, Guangdong Women and Children Medical Hospital, Guangzhou, China. [4]Nanfang Hospital, Southern Medical University, Guangzhou, China. [5]Guangzhou University of Chinese Medicine, Guangzhou, China.
推荐引用方式(GB/T 7714):
APA:
MLA:

资源点击量:2018 今日访问量:0 总访问量:645 更新日期:2024-07-01 建议使用谷歌、火狐浏览器 常见问题

版权所有©2020 广东省中医院 技术支持:重庆聚合科技有限公司 地址:广州市越秀区大德路111号