A bioinformatics analysis of potential cellular communication networks in non-alcoholic steatohepatitis and colorectal adenoma using scRNA-seq and bulk-seq
机构:[1]The Second Clinical Medical College of Guangzhou University of Traditional Chinese Medicine, Guangzhou, China广东省中医院[2]Division of Hematology and Oncology, Moores Cancer Center, University of California, San Diego, La Jolla, CA, USA[3]Department of Gastroenterology, the Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, Guangzhou, China大德路总院肛肠科大德路总院肛肠科广东省中医院
Background: Non-alcoholic fatty liver disease (NAFLD) is the global most common chronic liver disease. Non-alcoholic steatohepatitis (NASH), an inflammatory subtype of NAFLD, has been shown to significantly increase the risk of colorectal adenoma (CRA). Therefore, from the perspective of bioinformatics analysis, the potential mechanisms of NASH/NAFLD-CRA can be explored. Methods: In this study, we screened the differentially expressed genes (DEGs) and core effect pathways between NASH and CRA by analyzing the single-cell data of CRA patients and the high-throughput sequencing data (GSE37364 and GSE89632) in the online database. We screened therapeutic targets and biomarkers through gene function classification, pathway enrichment analysis, and protein-protein interaction network analysis. In terms of single cell data, we screened the core effect pathway and specific signal pathway of cell communication through cell annotation and cell communication analyses. The purpose of the study was to find potential biomarkers, therapeutic targets, and related effect pathways of NASH-CRA.Results: NASH-CRA comorbidities were concentrated in inflammatory regulation-related pathways, and the core genes of disease progression included IL1B, FOSL1, EGR1, MYC, PTGS2, and FOS. The results suggested the key pathway of NASH-CRA might be the WNT pathway. The main cell signal communication pathways included WNT2B - (FZD6 + LRP5) and WNT2B - (FZD6 + LRP6). The send-receive process occurred in embryonic stem cells.Conclusions: The core genes of NASH-CRA (FOS, EGR1, MYC, PTGS2, FOSL1, and IL1B) may participate in inflammation and immune responses through up-regulation in the process of disease occurrence, interfering with the pathophysiological process of CRA and NASH. NASH-CRA produces cell signal communication in the WNT pathway sent by WNT2B and received by FZD6, LRP5, and LRP6 in embryonic stem cells. These findings may help formulate early diagnosis and treatment strategies for CRA in NAFLD/NASH patients, and further explore corresponding prognostic markers and potential approaches. The significance of scRNA-seq in exploring tumor heterogeneity lies in promoting our understanding of the
基金:
University Scientific Research Project of Guangdong Provincial Department of Education - key field project [2021ZDZX2059]; High-level University Discipline Collaborative Innovation Team [202 1xk58]; Guangzhou Science and Technology Plan Project [202201020377]; Special Support for Clinical Research of Guangdong Hospital of Traditional Chinese Medicine [YN1010914]; Special Project of Science and Technology Innovation Strategy of Guangdong Province [pdjh2021b0123]; Guangzhou University of Chinese Medicine "Double First-Class"
第一作者机构:[1]The Second Clinical Medical College of Guangzhou University of Traditional Chinese Medicine, Guangzhou, China
共同第一作者:
通讯作者:
通讯机构:[3]Department of Gastroenterology, the Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, Guangzhou, China[*1]Department of Gastroenterology, the Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, 111 Dade Road, Yuexiu District, Guangzhou 510120, China
推荐引用方式(GB/T 7714):
Mo Jiahao,Liu Chang,Fan Longxiu,et al.A bioinformatics analysis of potential cellular communication networks in non-alcoholic steatohepatitis and colorectal adenoma using scRNA-seq and bulk-seq[J].JOURNAL OF GASTROINTESTINAL ONCOLOGY.2023,14(4):1770-1787.doi:10.21037/jgo-23-502.
APA:
Mo, Jiahao,Liu, Chang,Fan, Longxiu,Wu, Shaohua,Husain, Hatim...&Zhang, Beiping.(2023).A bioinformatics analysis of potential cellular communication networks in non-alcoholic steatohepatitis and colorectal adenoma using scRNA-seq and bulk-seq.JOURNAL OF GASTROINTESTINAL ONCOLOGY,14,(4)
MLA:
Mo, Jiahao,et al."A bioinformatics analysis of potential cellular communication networks in non-alcoholic steatohepatitis and colorectal adenoma using scRNA-seq and bulk-seq".JOURNAL OF GASTROINTESTINAL ONCOLOGY 14..4(2023):1770-1787