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Vogesella urethralis sp. nov., isolated from human urine, and emended descriptions of Vogesella perlucida and Vogesella mureinivorans

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机构: [1]Department of Clinical Laboratory, The Second Clinic Medical College, Guangzhou University of Chinese Medicine, Guangzhou510000, PR China [2]Department of Clinical Laboratory, Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou, 510000, PR China [3]Department of Clinical Laboratory, The First Affiliated Hospital of Sun Yat-senUniversity, Guangzhou 510080, PR China [4]Hackensack-MeridianHealthCenter for Discovery and Innovation, Nutley, NJ 07110, USA
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关键词: Vogesella urethralis sp nov polyphasic taxonomy urine

摘要:
A novel Vogesella strain, YM-1(T), was recovered from human urine in PR China in 2017. Cells of strain YM-1(T) were Gram-stain-negative, rod-shaped, aerobic, motile, non-spore-forming and poly-beta-hydroxybutyrate-accumulating. The strain contained C-16:1 omega 6c/C-16:1 omega 7c, C-16:0 and C-18:0 omega 7c as major fatty acids; phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and an unidentified phospholipid as major polar lipids; and ubiquinone-8 as the predominant respiratory quinone. Comparison of 16S rRNA gene sequences indicated that this strain had highest similarities to Vogesella perlucida DS-28(T) (98.8%) and Vogesella mureinivorans 389(T) (98.1%). The results of phylogenetic analysis based on the 16S rRNA gene sequences revealed that the novel strain was clustered and well separated with V. perlucida DS-28(T) and V. mureinivorans 389(T) within the genus Vogesella. The average nucleotide identity (ANI) and amino acid identity (AAI) analyses showed that this strain was not identified as V. perlucida DS-28(T) or V. mureinivorans 389(T), with values well below the threshold limit for species demarcation (ANI <88.1%, AAI <88.6 %). Based on the above results, strain YM-1(T) is proposed to be a novel species of the genus Vogesella with the name Vogesella urethralis sp. nov. (YM-1(T)=NBRC 113779=CGMCC 1.17135).

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出版当年[2019]版:
大类 | 4 区 生物
小类 | 4 区 微生物学
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大类 | 4 区 生物学
小类 | 4 区 微生物学
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Q3 MICROBIOLOGY
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Q4 MICROBIOLOGY

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第一作者机构: [1]Department of Clinical Laboratory, The Second Clinic Medical College, Guangzhou University of Chinese Medicine, Guangzhou510000, PR China [2]Department of Clinical Laboratory, Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou, 510000, PR China
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通讯机构: [1]Department of Clinical Laboratory, The Second Clinic Medical College, Guangzhou University of Chinese Medicine, Guangzhou510000, PR China [2]Department of Clinical Laboratory, Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou, 510000, PR China
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