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Multiomics analysis of tumor mutational burden across cancer types

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机构: [1]Department of Pathology, School of Basic Medicine, Anhui Medical University, Hefei, Anhui 230032, China [2]State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou 510060, China [3]The Second Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510120, China [4]Department of Pathology, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230022, China
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关键词: Tumor mutational burden (TMB) Molecular alterations Differential expression Signaling pathway Immunology Survival

摘要:
Whether tumor mutational burden (TMB) is related to improved survival outcomes or the promotion of immunotherapy in various malignant tumors remains controversial, and we lack a comprehensive understanding of TMB across cancers. Based on the data obtained from The Cancer Genome Atlas (TCGA), we conducted a multiomics analysis of TMB across 21 cancer types to identify characteristics related to TMB and determine the mechanism as it relates to prognosis, gene expression, gene mutation and signaling pathways. In our study, TMB was found to have a significant relationship with prognosis for 21 tumors, and the relationship was different in different tumors. TMB may also be related to different outcomes for patients with different tumor subtypes. TMB was confirmed to be correlated with clinical information, such as age and sex. Mutations in GATA3 and MAP3K1 in beast invasive carcinoma (BRCA), TCF7L2 in colon adenocarcinoma (COAD), NFE2L2 in esophageal carcinoma (ESCA), CIC and IDHI in brain lower grade glioma (LGG), CDHI in stomach adenocarcinoma (STAD), and TP53 in uterine corpus endometrial carcinoma (UCEC) were demonstrated to be correlated with lower TMB. Moreover, we identified differentially expressed genes (DEGs) and differentially methylated regions (DMRs) according to different TMB levels in 21 cancers. We also investigated the correlation between enrichment of signaling pathways, immune cell infiltration and TMB. In conclusion, we identified multiomic characteristics related to the TMB in 21 tumors, providing support for a comprehensive understanding of the role of TMB in different tumors. (C) 2021 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.

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出版当年[2020]版:
大类 | 2 区 生物
小类 | 2 区 生化与分子生物学
最新[2025]版:
大类 | 3 区 生物学
小类 | 3 区 生化与分子生物学
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出版当年[2019]版:
Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
最新[2023]版:
Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY

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第一作者机构: [1]Department of Pathology, School of Basic Medicine, Anhui Medical University, Hefei, Anhui 230032, China
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通讯机构: [1]Department of Pathology, School of Basic Medicine, Anhui Medical University, Hefei, Anhui 230032, China [4]Department of Pathology, The First Affiliated Hospital of Anhui Medical University, Hefei, Anhui 230022, China
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