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Novel necroptosis-related gene signature for predicting the prognosis of pancreatic adenocarcinoma.

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机构: [1]Guangzhou University of Chinese Medicine, Guangzhou, Guangdong Province 510006, China. [2]Shantou Health School, Shantou, Guangdong Province 515061, China. [3]Yunnan University of Chinese Medicine, Kunming, Yunnan Province 650500, China. [4]Kunming Municipal Hospital of Traditional Chinese Medicine, Kunming, Yunnan Province 650011, China.
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关键词: pancreatic adenocarcinoma (PAAD) necroptosis‐related genes (NRGs) TCGA and GEO datasets immunity m6A and immune checkpoint bioinformatics analysis

摘要:
Pancreatic adenocarcinoma (PAAD) is a deadly digestive system tumor with a poor prognosis. Recently, necroptosis has been considered as a type of inflammatory programmed cell death. However, the expression of necroptosis-related genes (NRGs) in PAAD and their associations with prognosis remain unclear. NRGs' prediction potential in PAAD samples from The TCGA and GEO datasets was investigated. The prediction model was constructed using Lasso regression. Co-expression analysis showed that gene expression was closely related to necroptosis. NRGs were shown to be somewhat overexpressed in high-risk people even when no other clinical symptoms were present, indicating that they may be utilized in a model to predict PAAD prognosis. GSEA showed immunological and tumor-related pathways in the high-risk group. Based on the findings, immune function and m6A genes differ significantly between the low-risk and high-risk groups. MET, AM25C, MROH9, MYEOV, FAM111B, Y6D, and PPP2R3A might be related to the oncology process for PAAD patients. Moreover, CASKIN2, TLE2, USP20, SPRN, ARSG, MIR106B, and MIR98 might be associated with low-risk patients with PAAD. NRGs and the relationship of the immune function, immune checkpoints, and m6A gene expression with NRGs in PAAD may be considered as potential therapeutic targets that should be further studied.

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大类 | 3 区 医学
小类 | 3 区 细胞生物学 3 区 老年医学
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第一作者机构: [1]Guangzhou University of Chinese Medicine, Guangzhou, Guangdong Province 510006, China.
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