机构:[1]Research Center for Drug Safety Evaluation of Hainan, Hainan Medical University, Haikou, Hainan 571199, China.[2]Jiangsu Food and Pharmaceutical Science College, Huaian, Jiangsu 223023, China.[3]The Fourth Clinical Medical College of Guangzhou University of Chinese Medicine (Shenzhen Traditional Chinese Medicine Hospital), Shenzhen, Guangdong 518000, China.深圳市中医院深圳医学信息中心[4]Chongqing Three Gorges Medical College, Chongqing 404120, China.
Osteoarthritis (OA) is the most common degenerative joint disease worldwide. Further improving the current limited understanding of osteoarthritis has positive clinical value.OA samples were collected from GEO database and endoplasmic reticulum related genes (ERRGs) were identified. The WGCNA network was further built to identify the crucial gene module. Based on the expression profiles of characteristic ERRGs, LASSO algorithm was used to select key factors according to the minimum λ value. Random forest (RF) algorithm was used to calculate the importance of ERRGs. Subsequently, overlapping genes based on LASSO and RF algorithms were identified as ERRGs-related diagnostic biomarkers. In addition, OA specimens were also collected and performed qRT-PCR quantitative analysis of selected ERRGs.We identified four ERRGs associated with OA risk assessment through machine learning methods, and verified the abnormal expressions of these screened markers in OA patients through in vitro experiments. The influence of selected markers on OA immune infiltration was also evaluated.Our results provide new evidence for the role of ER stress in the OA progression, as well as new markers and potential intervention targets for OA.
基金:
the Education Department of Hainan Province, with the project number: Hnky2023-33. Furthermore, it received support from the Huai’an City Science and Technology Project (HABZ202226) and Chongqing Science and Technology Youth Project (KJQN202302721).
语种:
外文
PubmedID:
中科院(CAS)分区:
出版当年[2023]版:
大类|3 区医学
小类|3 区细胞生物学3 区老年医学
最新[2025]版:
无
第一作者:
第一作者机构:[1]Research Center for Drug Safety Evaluation of Hainan, Hainan Medical University, Haikou, Hainan 571199, China.
通讯作者:
推荐引用方式(GB/T 7714):
Liu Tingting,Li Xiaomao,Pang Mu,et al.Machine learning based endoplasmic reticulum related diagnostic biomarker and immune microenvironment landscape for osteoarthritis[J].Aging.2024,16:doi:10.18632/aging.205611.
APA:
Liu Tingting,Li Xiaomao,Pang Mu,Wang Lifen,Li Ye&Sun Xizhe.(2024).Machine learning based endoplasmic reticulum related diagnostic biomarker and immune microenvironment landscape for osteoarthritis.Aging,16,
MLA:
Liu Tingting,et al."Machine learning based endoplasmic reticulum related diagnostic biomarker and immune microenvironment landscape for osteoarthritis".Aging 16.(2024)