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Single-cell transcriptome analysis upon ECM-remodeling meningioma cells

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机构: [1]Department of Neurosurgery, The First Hospital of Shanxi Medical University, Taiyuan, Shanxi, China [2]Department of Neurosurgery, The First Afliated Hospital of Jinan University, Guangzhou, China [3]Department of Pathology, Shanxi Provincial People’s Hospital, Taiyuan 030012, China [4]Department of Clinical Research, the First Afliated Hospital of Jinan University, Guangzhou 510632, China [5]Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Informatization, Guangzhou 510632, China
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关键词: Meningioma  Single-cell RNA sequencing  ECM-remodeling  Copy number variation

摘要:
Meningiomas are the most common tumours that primarily arise in the central nervous system, but their intratumoural heterogeneity has not yet been thoroughly studied. We aimed to investigate the transcriptome characteristics and biological properties of ECM-remodeling meningioma cells. Single-cell RNA sequencing (ScRNA-seq) data from meningioma samples were acquired and used for analyses. We conducted comprehensive bioinformatics analyses, including screening for differentially expressed genes (DEGs), Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathway and Gene Ontology (GO) term enrichment analyses, Gene Set Enrichment Analysis (GSEA), protein-protein interaction (PPI) analysis, and copy number variation (CNV) analysis on single-cell sequencing data from meningiomas. Eighteen cell types, including six meningioma subtypes, were identified in the data. ECM-remodeling meningioma cells (MGCs) were mainly distributed in brain-tumour interface tissues. KEGG and GO enrichment analyses revealed that 908 DEGs were mainly related to cell adhesion, extracellular matrix organization, and ECM-receptor interaction. GSEA analysis demonstrated that homophilic cell adhesion via plasma membrane adhesion molecules was significantly enriched (NES = 2.375, P < 0.001). CNV analysis suggested that ECM-remodeling MGCs showed considerably lower average CNV scores. ECM-remodeling MGCs predominantly localized at the brain-tumour interface area and adhere stably to the basement membrane with a lower degree of malignancy. This study provides novel insights into the malignancy of meningiomas.© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

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出版当年[2023]版:
大类 | 3 区 医学
小类 | 3 区 临床神经病学 3 区 外科
最新[2025]版:
大类 | 3 区 医学
小类 | 3 区 临床神经病学 3 区 外科
第一作者:
第一作者机构: [1]Department of Neurosurgery, The First Hospital of Shanxi Medical University, Taiyuan, Shanxi, China [2]Department of Neurosurgery, The First Afliated Hospital of Jinan University, Guangzhou, China
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通讯机构: [4]Department of Clinical Research, the First Afliated Hospital of Jinan University, Guangzhou 510632, China [5]Guangdong Provincial Key Laboratory of Traditional Chinese Medicine Informatization, Guangzhou 510632, China
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