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Identification of osteoporosis markers through bioinformatic functional analysis of serum proteome.

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机构: [1]Institute of Translational Medicine, Medical College, Yangzhou University, [2]Jiangsu Key Laboratory of Experimental and Translational Non-coding RNAResearch, Yangzhou, Jiangsu, PR China, [3]School of Graduate Studies, Rutgers,The State University of New Jersey, Newark, NJ, [4]No. 5 Region, The FirstAffiliated Hospital of Guangzhou University of Chinese Medicine, [5]Department ofJoint Diseases, The Third Affiliated Hospital of Guangzhou University of ChineseMedicine, [6]Traumatology and Orthopedics Institute of Guangzhou University ofChinese Medicine, Guangzhou, Guangdong, China
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关键词: bioinformatics differentially expressed proteins osteoporosis protein markers serum proteome

摘要:
Osteoporosis is a severe chronic skeletal disorder that increases the risks of disability and mortality; however, the mechanism of this disease and the protein markers for prognosis of osteoporosis have not been well characterized. This study aims to characterize the imbalanced serum proteostasis, the disturbed pathways, and potential serum markers in osteoporosis by using a set of bioinformatic analyses. In the present study, the large-scale proteomics datasets (PXD006464) were adopted from the Proteome Xchange database and processed with MaxQuant. The differentially expressed serum proteins were identified. The biological process and molecular function were analyzed. The protein-protein interactions and subnetwork modules were constructed. The signaling pathways were enriched. We identified 209 upregulated and 230 downregulated serum proteins. The bioinformatic analyses revealed a highly overlapped functional protein classification and the gene ontology terms between the upregulated and downregulated protein groups. Protein-protein interactions and pathway analyses showed a high enrichment in protein synthesis, inflammation, and immune response in the upregulated proteins, and cell adhesion and cytoskeleton regulation in the downregulated proteins. Our findings greatly expand the current view of the roles of serum proteins in osteoporosis and shed light on the understanding of its underlying mechanisms and the discovery of serum proteins as potential markers for the prognosis of osteoporosis.

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出版当年[2019]版:
大类 | 4 区 医学
小类 | 3 区 医学:内科
最新[2025]版:
大类 | 4 区 医学
小类 | 4 区 医学:内科
第一作者:
第一作者机构: [1]Institute of Translational Medicine, Medical College, Yangzhou University, [2]Jiangsu Key Laboratory of Experimental and Translational Non-coding RNAResearch, Yangzhou, Jiangsu, PR China,
通讯作者:
通讯机构: [5]Department ofJoint Diseases, The Third Affiliated Hospital of Guangzhou University of ChineseMedicine, [6]Traumatology and Orthopedics Institute of Guangzhou University ofChinese Medicine, Guangzhou, Guangdong, China [*1]the Third Affiliated Hospital, Traumatology and Orthopedics Institute of Guangzhou, University of Chinese Medicine, China
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