Over the past few decades, researchers have become aware of the importance of non-coding RNA, which makes up the vast majority of the transcriptome. Long non-coding RNAs (lncRNAs) in turn constitute the largest fraction of non-coding transcripts. Increasing evidence has been found for the crucial roles of lncRNAs in both tissue homeostasis and development, and for their functional contributions to and regulation of the development and progression of various human diseases such as cancers. However, so far, only few findings with regards to functional lncRNAs in cancers have been translated into clinical applications. Based on multiple factors such as binding affinity of miRNAs to their lncRNA sponges, we analyzed the competitive endogenous RNA (ceRNA) network for the colorectal cancer RNA-seq datasets from The Cancer Genome Atlas (TCGA). After performing the ceRNA network construction and survival analysis, the lncRNA KCNQ1OT1 was found to be significantly upregulated in colorectal cancer tissues and associated with the survival of patients. A KCNQ1OT1-related lncRNA-miRNA-mRNA ceRNA network was constructed. A gene set variation analysis (GSVA) indicated that the expression of the KCNQ1OT1 ceRNA network in colorectal cancer tissues and normal tissues were significantly different, not only in the TCGA-COAD dataset but also in three other GEO datasets used as validation. By predicting comprehensive immune cell subsets from gene expression data, in samples grouped by differential expression levels of the KCNQ1OT1 ceRNA network in a cohort of patients, we found that CD4(+), CD8(+), and cytotoxic T cells and 14 other immune cell subsets were at different levels in the high- and low-KCNQ1OT1 ceRNA network score groups. These results indicated that the KCNQ1OT1 ceRNA network could be involved in the regulation of the tumor microenvironment, which would provide the rationale to further exploit KCNQ1OT1 as a possible functional contributor to and therapeutic target for colorectal cancer.</p>
基金:
This study was supported by the Medical and Health Science and
Technology Project of Panyu District, Guangzhou (No.2019-Z04-
88; 2018-Z04-59), the Guangdong Provincial Bureau of
traditional Chinese Medicine Research Project (No. 20201317),
Special Funding for TCM Science and Technology Research of
Guangdong Provincial Hospital of Chinese Medicine (no.
YN2019QL12) and the Guangzhou Health and Family
Planning Commission Program (No. 20181A011118).
第一作者机构:[1]Guangzhou Panyu Central Hospital, Guangzhou, China,
通讯作者:
推荐引用方式(GB/T 7714):
Junjie Liu,Wei Lv,Shuling Li,et al.Regulation of Long Non-coding RNA KCNQ1OT1 Network in Colorectal Cancer Immunity[J].FRONTIERS IN GENETICS.2021,12:doi:10.3389/fgene.2021.684002.
APA:
Junjie Liu,Wei Lv,Shuling Li&Jingwen Deng.(2021).Regulation of Long Non-coding RNA KCNQ1OT1 Network in Colorectal Cancer Immunity.FRONTIERS IN GENETICS,12,
MLA:
Junjie Liu,et al."Regulation of Long Non-coding RNA KCNQ1OT1 Network in Colorectal Cancer Immunity".FRONTIERS IN GENETICS 12.(2021)