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Temporal Expression Classification and Normalization From Chinese Narrative Clinical Texts: Pattern Learning Approach.

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收录情况: ◇ SCIE ◇ SSCI

机构: [1]School of Information Science and Technology, Guangdong University of Foreign Studies, Guangzhou, China [2]Department of Big Data Research of Medicine, The Second Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China [3]School of Business, Guangdong University of Foreign Studies, Guangzhou, China
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DOI: 10.2196/17652
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关键词: Temporal expression extraction Temporal expression normalization Machine learning Heuristic rule Pattern learning Clinical text

摘要:
Temporal information frequently exists in the representation of the disease progress, prescription, medication, surgery progress, or discharge summary in narrative clinical text. The accurate extraction and normalization of temporal expressions can positively boost the analysis and understanding of narrative clinical texts to promote clinical research and practice. The goal of the study was to propose a novel approach for extracting and normalizing temporal expressions from Chinese narrative clinical text. TNorm, a rule-based and pattern learning-based approach, has been developed for automatic temporal expression extraction and normalization from unstructured Chinese clinical text data. TNorm consists of three stages: extraction, classification, and normalization. It applies a set of heuristic rules and automatically generated patterns for temporal expression identification and extraction of clinical texts. Then, it collects the features of extracted temporal expressions for temporal type prediction and classification by using machine learning algorithms. Finally, the features are combined with the rule-based and a pattern learning-based approach to normalize the extracted temporal expressions. The evaluation dataset is a set of narrative clinical texts in Chinese containing 1459 discharge summaries of a domestic Grade A Class 3 hospital. The results show that TNorm, combined with temporal expressions extraction and temporal types prediction, achieves a precision of 0.8491, a recall of 0.8328, and a F1 score of 0.8409 in temporal expressions normalization. This study illustrates an automatic approach, TNorm, that extracts and normalizes temporal expression from Chinese narrative clinical texts. TNorm was evaluated on the basis of discharge summary data, and results demonstrate its effectiveness on temporal expression normalization. ©Xiaoyi Pan, Boyu Chen, Heng Weng, Yongyi Gong, Yingying Qu. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 27.07.2020.

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出版当年[2019]版:
大类 | 3 区 医学
小类 | 2 区 医学:信息
最新[2025]版:
大类 | 3 区 医学
小类 | 3 区 医学:信息
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出版当年[2018]版:
Q2 MEDICAL INFORMATICS
最新[2023]版:
Q2 MEDICAL INFORMATICS

影响因子: 最新[2023版] 最新五年平均 出版当年[2018版] 出版当年五年平均 出版前一年[2017版] 出版后一年[2019版]

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第一作者机构: [1]School of Information Science and Technology, Guangdong University of Foreign Studies, Guangzhou, China
通讯作者:
通讯机构: [3]School of Business, Guangdong University of Foreign Studies, Guangzhou, China [*1]School of Business Guangdong University of Foreign Studies Faculty Building, Higher Education Mega Center Guangdong University of Foreign Studies Guangzhou, China
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